Issues · abyss-project / abyss-pipeline

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Slides for practical pipeline use

#33 · opened May 07, 2020 by BRANDT
- CLOSED
- 3
updated May 11, 2020
explanation frogs_process vs frogs_only

#32 · opened May 07, 2020 by BRANDT
- CLOSED
- 3
updated May 11, 2020
final pipeline correction/dernière correction abyss-pipeline

#31 · opened Apr 22, 2020 by BRANDT
- 4
updated May 07, 2020
For COI missing .fasta.properties files

#30 · opened Feb 05, 2020 by GUNTHER Feb 7, 2020
- CLOSED
- 3
updated Feb 11, 2020
Problème de dadamerge avec le V9

#28 · opened Jan 19, 2020 by ARNAUD-HAOND
- CLOSED
- 2
updated Jan 22, 2020
Bug lors de la réintégration de la double PCR

#27 · opened Jan 12, 2020 by ARNAUD-HAOND
- CLOSED
- 14
updated Feb 02, 2020
Modifier le readme.txt

#25 · opened Jul 30, 2019 by ARNAUD-HAOND
- CLOSED
- 1
updated Jul 30, 2019
Revue des paramètres pour dada2, blast et lulu

#22 · opened Apr 26, 2019 by QUINTRIC
- CLOSED
- 11
updated May 13, 2019
Implementation of the Bayesian RDP-classifier taxonomic assignment method in ABYSS pipeline

#21 · opened Apr 10, 2019 by BRANDT
- CLOSED
- 17
updated Feb 04, 2020
Ajout du package DECIPHER pour assignation taxonomique des ASVs avec IdTaxa

#19 · opened Feb 27, 2019 by TROUCHE
- CLOSED
- 1
updated Mar 04, 2019
Concatenate sanger sequences to reference databases

#18 · opened Dec 20, 2018 by COWART Jan 10, 2019
- CLOSED
- 7
updated Apr 16, 2019
augmentation des ressources utilisées par extract.pbs

#17 · opened Dec 20, 2018 by BRANDT Dec 20, 2018
- CLOSED
- 0
updated Apr 16, 2019
Tri des fichiers de séquences du Genoscope en fonction du run de séquençage pour Dada2

#16 · opened Dec 17, 2018 by BRANDT Dec 20, 2018
- CLOSED
- 1
updated Dec 20, 2018
Probleme dada2 avec le nouveau script de dada2 incluant coi

#15 · opened Dec 05, 2018 by BRANDT Dec 6, 2018
- CLOSED
- 4
updated Dec 10, 2018
Probleme Dada2 18SV4 et V9

#13 · opened Nov 29, 2018 by BRANDT Nov 30, 2018
- CLOSED
- 25
updated Apr 16, 2019
Rajout d'une base de donnees SILVA 16S+18S sur datarmor

#12 · opened Nov 28, 2018 by BRANDT
- CLOSED
- 3
updated Nov 29, 2018
Integrer plus de resolution dans les assignations " multi-subject"

#11 · opened Nov 27, 2018 by BRANDT Nov 27, 2018
- CLOSED
- 6
updated Nov 29, 2018
Possibilite d'integrer usearch_global comme algorithme d'assignation

#10 · opened Nov 27, 2018 by BRANDT Nov 27, 2018
- CLOSED
- 8
updated Nov 29, 2018
Ajouter les bonnes bases de donnees dans le config (et si plusieurs alors mettre les autres en options commentees)

#9 · opened Nov 23, 2018 by BRANDT Nov 26, 2018
- CLOSED
- 2
updated Nov 26, 2018
Controls sur les echantillons

#8 · opened Nov 22, 2018 by QUINTRIC
- CLOSED
- 1
updated Nov 23, 2018