Commit 034fc1d0 authored by Laure QUINTRIC's avatar Laure QUINTRIC

format data for frogs

parent 8ea16e19
......@@ -126,11 +126,6 @@ if __name__ == '__main__':
out = runcmd(cmd)
jobs.append(out.strip().split(".")[0])
logger.debug("job number : {}".format(out))
#create frogs archive
cmd="cd {}/frogs; tar cvf samples.tar *_{{R1,R2}}.fastq.gz && rm {}/frogs/*_{{R1,R2}}.fastq.gz".format(output, output)
out=runcmd(cmd)
#check if number of generated files is ok
cmd="qsub -o {}/logs -V -W depend=afterok:{} {}/check.pbs".format(output,":".join(jobs), directory)
check = runcmd(cmd).strip().split(".")[0]
......
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