Commit 57cd09f7 authored by Laure QUINTRIC's avatar Laure QUINTRIC

format data for frogs

parent a9e5f414
......@@ -228,6 +228,9 @@ if __name__ == '__main__':
extractReads(inR1, inR2, outdir, forward, reverse, mismatch, tmpdir, trimreads)
#create frogs archive
os.system("cd {}/frogs; tar cvf samples.tar *_{{R1,R2}}.fastq.gz && rm *_{{R1,R2}}.fastq.gz".format(outdir))
cmd="cd {}/frogs; tar cvf samples.tar *_{{R1,R2}}.fastq.gz".format(outdir)
out=runcmd(cmd)
cmd="rm {}/frogs/*_{{R1,R2}}.fastq.gz".format(outdir)
out=runcmd(cmd)
logging.debug("End of processing")
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