Commit 5936feeb authored by Laure QUINTRIC's avatar Laure QUINTRIC

format data for frogs

parent 9c75308c
...@@ -228,6 +228,6 @@ if __name__ == '__main__': ...@@ -228,6 +228,6 @@ if __name__ == '__main__':
extractReads(inR1, inR2, outdir, forward, reverse, mismatch, tmpdir, trimreads) extractReads(inR1, inR2, outdir, forward, reverse, mismatch, tmpdir, trimreads)
#create frogs archive #create frogs archive
os.system("cd {}/frogs; tar cvf samples.tar *_{{R1,R2}}.fastq.gz".format(outdir)) os.system("cd {}/frogs; tar cvf samples.tar *_{{R1,R2}}.fastq.gz; rm *_{{R1,R2}}.fastq.gz".format(outdir))
logging.debug("End of processing") logging.debug("End of processing")
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