Commit b050b138 authored by Laure QUINTRIC's avatar Laure QUINTRIC

format data for frogs

parent 9b16a1a8
......@@ -228,6 +228,6 @@ if __name__ == '__main__':
extractReads(inR1, inR2, outdir, forward, reverse, mismatch, tmpdir, trimreads)
#create frogs archive
os.system("cd {}/frogs; tar cvf samples.tar *_{{R1,R2}}.fastq.gz && rm *_{{R1,R2}}.fastq.gz".format(outdir))
os.system("cd {}/frogs; tar cvf samples.tar *_{{R1,R2}}.fastq.gz".format(outdir))
logging.debug("End of processing")
Markdown is supported
0%
or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment