Commit e2210df6 authored by Laure QUINTRIC's avatar Laure QUINTRIC
Browse files

modify the way the frogs archive is created

parent cfcd06bb
......@@ -324,6 +324,6 @@ if __name__ == '__main__':
# We cannot create frogs archive if samples have not been parsed
if not rename :
#create frogs archive
os.system("cd {}/frogs; tar cvf samples.tar *_R*.fastq.gz".format(outdir))
os.system("mkdir -p {}/frogs; cd {}; tar cvf frogs/samples.tar *_{{R1F,R2R,R2F,R1R}}.fastq.gz".format(outdir,outdir))
logging.debug("End of processing")
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment