Commit f2721c33 authored by BRANDT's avatar BRANDT
Browse files

Update extractR1R2.pbs: remove useless command l.13 : cd...

Update extractR1R2.pbs: remove useless command l.13 : cd abyss/abyss-preprocessing, which was producing an error message for extractR1R2.pbs and causing abyss-pipeline to stop
parent 9ffff30d
......@@ -8,7 +8,7 @@
#load python 3.6
. /appli/bioinfo/python/3.6/env.sh
#run extract script on config file
#run extractR1R2.py script on config file
python $directory/extractR1R2.py --trimreads $trimreads --input-R1 $indir/$R1 --input-R2 $indir/$R2 --output-dir $output --barcode $barcode --properties $properties --tmpdir $tmpdir
cd abyss/abyss-preprocessing
#unload python 3.6
. /appli/bioinfo/python/3.6/delenv.sh
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