Added ORM dependencies, added extract file date, finding track points for that date.

README.md

 # smap_cyclones
 
+Package used to adapt SMAP data for a cyclone oriented usage.
 Provide scripts to extract cyclone data from SMAP NetCDF files.
\ No newline at end of file

bin/extractSmapCyclone.py

+#!/usr/bin/env python
+
 import argparse
 import logging
+import datetime
+import os
+import sys
+from sqlalchemy import create_engine, and_
+from sqlalchemy.orm import sessionmaker
+from cyclobs_orm import SimpleTrack
 
 logging.basicConfig()
 logger = logging.getLogger(os.path.basename(__file__))
 logger.setLevel(logging.INFO)
 
+def extractDateFromFilename(filename):
+    datePart = "-".join(filename.split("_")[4:7])
+    return datetime.datetime.strptime(datePart, "%Y-%m-%d")
+
+def getTrackPointsFromDatabase(session, smapDate):
+    reqTracks = session.query(SimpleTrack).filter(and_(SimpleTrack.date >= smapDate,
+                                                       SimpleTrack.date < smapDate + datetime.timedelta(days=1))).all()
+    return reqTracks
+
+
+def processSmapFile(session, file):
+    logger.debug(f"Processing {file}...")
+
+    fileDate = extractDateFromFilename(os.path.basename(file))
+    logger.debug(f"File date {fileDate}")
+    trackPoints = getTrackPointsFromDatabase(session, fileDate)
+    logger.debug(f"{trackPoints}")
+    trakcPointsPerSid = {trackPoint.sid: trackPoint for trackPoint in trackPoints}
+
+
 if __name__ == "__main__":
-    pass
\ No newline at end of file
+    description = """
+        Read SMAP netCDF files from a directory, extract the wind data of cyclones and save it into a new netCDF file.
+        """
+    parser = argparse.ArgumentParser(description=description)
+
+    parser.add_argument("--dbd", action="store", type=str, required=True, help='database (postgresql://user:pass@host:5432/base_name)')
+    parser.add_argument("--debug", action="store_true", default=False, help="Run in debug mode (verbose output)")
+    args = parser.parse_args()
+
+    if sys.gettrace():
+        logger.setLevel(logging.DEBUG)
+
+    if args.debug:
+        logger.setLevel(logging.DEBUG)
+
+    engine = create_engine(args.dbd)
+    Session = sessionmaker(bind=engine)
+    smapTests = ["/home/datawork-cersat-public/provider/remss/satellite/l3/smap/smap/wind/v1.0/daily/2020/110/RSS_smap_wind_daily_2020_04_19_v01.0.nc",
+                 "/home/datawork-cersat-public/provider/remss/satellite/l3/smap/smap/wind/v1.0/daily/2020/025/RSS_smap_wind_daily_2020_01_25_v01.0.nc"
+                 ]
+    for f in smapTests:
+        processSmapFile(Session(), f)

setup.py

@@ -5,11 +5,13 @@ from pathlib import Path
 import glob
 
 install_requires = [
+      'sqlalchemy',
 
+      'cyclobs_orm'
 ]
 
 setup(name='smap_cyclones',
-      description='cyclobs web server',
+      description='Package used to adapt SMAP data for a cyclone oriented usage.',
       url='https://gitlab.ifremer.fr/cyclobs/cyclobs',
       author = "Théo CEVAER",
       author_email = "theo.cevaer@ifremer.fr",
@@ -18,7 +20,7 @@ setup(name='smap_cyclones',
       include_package_data=True,
       scripts=glob.glob('bin/**'),
       use_scm_version=True,
-      setup_requires=['setuptools_scm'ss],
+      setup_requires=['setuptools_scm'],
       install_requires=install_requires,
       data_files=[ (os.path.dirname(p) , [p] ) for p in  glob.glob('etc/**',recursive=True) if not os.path.isdir(p) ],
       zip_safe = False