createCommonTable.xml 4.2 KB
Newer Older
PECQUOT's avatar
PECQUOT committed
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
<?xml version="1.0" encoding="UTF-8"?>
<!--
  #%L
  Dali :: Core
  %%
  Copyright (C) 2017 Ifremer
  %%
  This program is free software: you can redistribute it and/or modify
  it under the terms of the GNU Affero General Public License as published by
  the Free Software Foundation, either version 3 of the License, or
  (at your option) any later version.
  
  This program is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.
  
  You should have received a copy of the GNU Affero General Public License
  along with this program.  If not, see <http://www.gnu.org/licenses/>.
  #L%
  -->

<queries name="extractionCreateCommonTable">

25
	<query type="create" temp="true" table="&amp;commonTableName" option="DISTINCT">
PECQUOT's avatar
PECQUOT committed
26 27 28 29 30

		<select alias="SURVEY_ID" type="number">RAW.SURVEY_ID</select>
		<select alias="SAMPLING_OPER_ID" type="number">RAW.SAMPLING_OPER_ID</select>
		<select alias="MEAS_INDIV_ID" type="number">RAW.MEAS_INDIV_ID</select>
		<select alias="REF_TAXON_NM" type="text">RAW.REF_TAXON_NM</select>
31 32 33
		<select alias="TAXON_NAME_ID" type="number" group="simple,complete,sinp">RAW.TAXON_NAME_ID</select>
		<select alias="TAXON_NAME_NM" type="text" group="simple,complete,sinp">RAW.TAXON_NAME_NM</select>
		<select alias="TAXON_PAMPA" type="text" group="pampa">RAW.TAXON_PAMPA</select>
PECQUOT's avatar
PECQUOT committed
34 35 36 37 38
		<select alias="TAXON_GROUP_NM" type="text">RAW.TAXON_GROUP_NM</select>
		<from alias="RAW"><![CDATA[&rawTableName]]></from>
		<where><![CDATA[RAW.MEAS_INDIV_ID IS NOT NULL]]></where>

		<union>
39
			<!--	add non individual measurements from sampling operations -->
PECQUOT's avatar
PECQUOT committed
40 41 42 43 44
			<subquery option="DISTINCT">
				<subselect alias="SURVEY_ID" type="number">RAW.SURVEY_ID</subselect>
				<subselect alias="SAMPLING_OPER_ID" type="number">RAW.SAMPLING_OPER_ID</subselect>
				<subselect alias="MEAS_INDIV_ID" type="number">RAW.MEAS_INDIV_ID</subselect>
				<subselect alias="REF_TAXON_NM" type="text">RAW.REF_TAXON_NM</subselect>
45 46 47
				<subselect alias="TAXON_NAME_ID" type="number" group="simple,complete,sinp">RAW.TAXON_NAME_ID</subselect>
				<subselect alias="TAXON_NAME_NM" type="text" group="simple,complete,sinp">RAW.TAXON_NAME_NM</subselect>
				<subselect alias="TAXON_PAMPA" type="text" group="pampa">RAW.TAXON_PAMPA</subselect>
PECQUOT's avatar
PECQUOT committed
48 49 50
				<subselect alias="TAXON_GROUP_NM" type="text">RAW.TAXON_GROUP_NM</subselect>
				<from alias="RAW"><![CDATA[&rawTableName]]></from>
				<where><![CDATA[RAW.MEAS_INDIV_ID IS NULL]]></where>
51
				<where operator="AND"><![CDATA[RAW.SAMPLING_OPER_ID IS NOT NULL]]></where>
PECQUOT's avatar
PECQUOT committed
52 53
				<where operator="AND"><![CDATA[NOT EXISTS (SELECT RAW2.SURVEY_ID FROM &rawTableName RAW2
				  WHERE RAW.SURVEY_ID = RAW2.SURVEY_ID
54 55 56
				  AND RAW.SAMPLING_OPER_ID = RAW2.SAMPLING_OPER_ID
				  AND RAW2.MEAS_INDIV_ID IS NOT NULL
				  )]]></where>
PECQUOT's avatar
PECQUOT committed
57 58
			</subquery>
		</union>
59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81

		<union>
			<!--	add non individual measurements from surveys -->
			<subquery option="DISTINCT">
				<subselect alias="SURVEY_ID" type="number">RAW.SURVEY_ID</subselect>
				<subselect alias="SAMPLING_OPER_ID" type="number">RAW.SAMPLING_OPER_ID</subselect>
				<subselect alias="MEAS_INDIV_ID" type="number">RAW.MEAS_INDIV_ID</subselect>
				<subselect alias="REF_TAXON_NM" type="text">RAW.REF_TAXON_NM</subselect>
				<subselect alias="TAXON_NAME_ID" type="number" group="simple,complete,sinp">RAW.TAXON_NAME_ID</subselect>
				<subselect alias="TAXON_NAME_NM" type="text" group="simple,complete,sinp">RAW.TAXON_NAME_NM</subselect>
				<subselect alias="TAXON_PAMPA" type="text" group="pampa">RAW.TAXON_PAMPA</subselect>
				<subselect alias="TAXON_GROUP_NM" type="text">RAW.TAXON_GROUP_NM</subselect>
				<from alias="RAW"><![CDATA[&rawTableName]]></from>
				<where><![CDATA[RAW.MEAS_INDIV_ID IS NULL]]></where>
				<where operator="AND"><![CDATA[RAW.SAMPLING_OPER_ID IS NULL]]></where>
				<where operator="AND"><![CDATA[NOT EXISTS (SELECT RAW2.SURVEY_ID FROM &rawTableName RAW2
				  WHERE RAW.SURVEY_ID = RAW2.SURVEY_ID
				  AND ( (RAW2.SAMPLING_OPER_ID IS NULL AND RAW2.MEAS_INDIV_ID IS NOT NULL)
             OR (RAW2.SAMPLING_OPER_ID IS NOT NULL AND RAW2.MEAS_INDIV_ID IS NULL) )
				  )]]></where>
			</subquery>
		</union>

PECQUOT's avatar
PECQUOT committed
82 83 84
	</query>

</queries>