createCommonTable.xml 4.93 KB
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<?xml version="1.0" encoding="UTF-8"?>
<!--
  #%L
  Dali :: Core
  %%
  Copyright (C) 2017 Ifremer
  %%
  This program is free software: you can redistribute it and/or modify
  it under the terms of the GNU Affero General Public License as published by
  the Free Software Foundation, either version 3 of the License, or
  (at your option) any later version.
  
  This program is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.
  
  You should have received a copy of the GNU Affero General Public License
  along with this program.  If not, see <http://www.gnu.org/licenses/>.
  #L%
  -->

<queries name="extractionCreateCommonTable">

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	<query type="create" temp="true" table="&amp;commonTableName" option="DISTINCT">
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		<select alias="SURVEY_ID" type="number">RAW.SURVEY_ID</select>
		<select alias="SAMPLING_OPER_ID" type="number">RAW.SAMPLING_OPER_ID</select>
		<select alias="MEAS_INDIV_ID" type="number">RAW.MEAS_INDIV_ID</select>
		<select alias="REF_TAXON_NM" type="text">RAW.REF_TAXON_NM</select>
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		<select alias="TAXON_NAME_ID" type="number" group="simple,complete,sinp">RAW.TAXON_NAME_ID</select>
		<select alias="TAXON_NAME_NM" type="text" group="simple,complete,sinp">RAW.TAXON_NAME_NM</select>
		<select alias="TAXON_PAMPA" type="text" group="pampa">RAW.TAXON_PAMPA</select>
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		<select alias="TAXON_GROUP_NM" type="text">RAW.TAXON_GROUP_NM</select>
		<from alias="RAW"><![CDATA[&rawTableName]]></from>
		<where><![CDATA[RAW.MEAS_INDIV_ID IS NOT NULL]]></where>

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<!--		FIXME: only if old data have to be extract: ie. GCRMN_LAREUNION_LIT_BENTHOS 07/03/2012 data have measurements and taxon_measurements for same meas_indiv_id
 			to avoid blank duplicated lines replace first query by:

 			SELECT
					RAW.SURVEY_ID "SURVEY_ID",
					RAW.SAMPLING_OPER_ID "SAMPLING_OPER_ID",
					RAW.MEAS_INDIV_ID "MEAS_INDIV_ID",
					max(RAW.REF_TAXON_NM) "REF_TAXON_NM",
					max(RAW.TAXON_NAME_ID) "TAXON_NAME_ID",
					max(RAW.TAXON_NAME_NM) "TAXON_NAME_NM",
					max(RAW.TAXON_GROUP_NM) "TAXON_GROUP_NM"
			FROM
					EXT_R1583421502786 RAW
			WHERE
					RAW.MEAS_INDIV_ID IS NOT NULL
			group by RAW.SURVEY_ID, RAW.SAMPLING_OPER_ID, RAW.MEAS_INDIV_ID
			order by RAW.SURVEY_ID, RAW.SAMPLING_OPER_ID, RAW.MEAS_INDIV_ID;

 			-->

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		<union>
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			<!--	add non individual measurements from sampling operations -->
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			<subquery option="DISTINCT">
				<subselect alias="SURVEY_ID" type="number">RAW.SURVEY_ID</subselect>
				<subselect alias="SAMPLING_OPER_ID" type="number">RAW.SAMPLING_OPER_ID</subselect>
				<subselect alias="MEAS_INDIV_ID" type="number">RAW.MEAS_INDIV_ID</subselect>
				<subselect alias="REF_TAXON_NM" type="text">RAW.REF_TAXON_NM</subselect>
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				<subselect alias="TAXON_NAME_ID" type="number" group="simple,complete,sinp">RAW.TAXON_NAME_ID</subselect>
				<subselect alias="TAXON_NAME_NM" type="text" group="simple,complete,sinp">RAW.TAXON_NAME_NM</subselect>
				<subselect alias="TAXON_PAMPA" type="text" group="pampa">RAW.TAXON_PAMPA</subselect>
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				<subselect alias="TAXON_GROUP_NM" type="text">RAW.TAXON_GROUP_NM</subselect>
				<from alias="RAW"><![CDATA[&rawTableName]]></from>
				<where><![CDATA[RAW.MEAS_INDIV_ID IS NULL]]></where>
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				<where operator="AND"><![CDATA[RAW.SAMPLING_OPER_ID IS NOT NULL]]></where>
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				<where operator="AND"><![CDATA[NOT EXISTS (SELECT RAW2.SURVEY_ID FROM &rawTableName RAW2
				  WHERE RAW.SURVEY_ID = RAW2.SURVEY_ID
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				  AND RAW.SAMPLING_OPER_ID = RAW2.SAMPLING_OPER_ID
				  AND RAW2.MEAS_INDIV_ID IS NOT NULL
				  )]]></where>
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			</subquery>
		</union>
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		<union>
			<!--	add non individual measurements from surveys -->
			<subquery option="DISTINCT">
				<subselect alias="SURVEY_ID" type="number">RAW.SURVEY_ID</subselect>
				<subselect alias="SAMPLING_OPER_ID" type="number">RAW.SAMPLING_OPER_ID</subselect>
				<subselect alias="MEAS_INDIV_ID" type="number">RAW.MEAS_INDIV_ID</subselect>
				<subselect alias="REF_TAXON_NM" type="text">RAW.REF_TAXON_NM</subselect>
				<subselect alias="TAXON_NAME_ID" type="number" group="simple,complete,sinp">RAW.TAXON_NAME_ID</subselect>
				<subselect alias="TAXON_NAME_NM" type="text" group="simple,complete,sinp">RAW.TAXON_NAME_NM</subselect>
				<subselect alias="TAXON_PAMPA" type="text" group="pampa">RAW.TAXON_PAMPA</subselect>
				<subselect alias="TAXON_GROUP_NM" type="text">RAW.TAXON_GROUP_NM</subselect>
				<from alias="RAW"><![CDATA[&rawTableName]]></from>
				<where><![CDATA[RAW.MEAS_INDIV_ID IS NULL]]></where>
				<where operator="AND"><![CDATA[RAW.SAMPLING_OPER_ID IS NULL]]></where>
				<where operator="AND"><![CDATA[NOT EXISTS (SELECT RAW2.SURVEY_ID FROM &rawTableName RAW2
				  WHERE RAW.SURVEY_ID = RAW2.SURVEY_ID
				  AND ( (RAW2.SAMPLING_OPER_ID IS NULL AND RAW2.MEAS_INDIV_ID IS NOT NULL)
             OR (RAW2.SAMPLING_OPER_ID IS NOT NULL AND RAW2.MEAS_INDIV_ID IS NULL) )
				  )]]></where>
			</subquery>
		</union>

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	</query>

</queries>